Małe Czyste is a village in the administrative district of Gmina Stolno, within Chełmno County, Kuyavian-Pomeranian Voivodeship, in north-central Poland. It lies approximately 2 kilometres (1 mi) south-west of Stolno, 9 km (6 mi) south-east of Chełmno, 32 km (20 mi) north of Toruń, and 39 km (24 mi) north-east of Bydgoszcz. It is located in the Chełmno Land in the historic region of Pomerania.